PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 453aa    MW: 50594.6 Da    PI: 9.9235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708890genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-067193123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F+r  nL+ H r H
  676708890 71 FICEICNKGFKRDQNLQLHRRGH 93
               89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-77093No hitNo description
Gene3DG3DSA:3.30.160.605.3E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8667193IPR007087Zinc finger, C2H2
PfamPF121711.7E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0117193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355120113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-7143168No hitNo description
SMARTSM00355200148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NPTSSNSNKR KRNLPGNPGM YNPDAEVIAL  60
SPNSLMATNR FICEICNKGF KRDQNLQLHR RGHNLPWKLK QRTNKEQVKK KVYICPEKSC  120
VHHDPARALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVM SDWKAHSKIC GTREYRCDCG  180
TLFSRKDSFI THRAFCDALA EESARFVSVP PGAAEYLKNA SDAEVNLGNS KPNHQQRLLN  240
STSSQPGYNI NRNSINGFMG QSFTNQLPLS ANIFASSSSP SPRSASDSLQ NLWHLQGQSS  300
HQWLLNENNS NNNILQRGIS NDQEDHDTKK GISNISLFSS EARNSYYQSG GQVIASMSAT  360
ALLQKAAQMG SKRSSSSSNN STGFGLMTSS ILNNKQTENN IKIKEVDERG FTRDFLGVGS  420
QNRPWPLLMV NHNLPDLSPR STTDGTPTAD VNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528220.0AK352822.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150187.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X3
RefseqXP_009150182.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLM4EYE80.0M4EYE8_BRARP; Uncharacterized protein
STRINGBra033840.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.10.0C2H2-like zinc finger protein